q2-SCNIC installation - Library Support - QIIME 2 Forum
Aug 17, 2021 · I'm new to using QIIME2. I have installation problem with q2-SCNIC now. I fallowed this installation guide GitHub - lozuponelab/q2-SCNIC: A QIIME2 plugin for running SCNIC and it has …
how to reference the plugins used - QIIME 2 Forum
Jan 8, 2022 · I wanted to ask if anyone can help me to know how to cite the qiime plugins (permanova, shannon, observed features, evenness, faith phylogenetic tree, braycurtis, scenic plugin, taxa …
PhD Opportunity - Soil Microbial Ecology - QIIME 2 Forum
Mar 23, 2023 · UTSA is a public research university and a Hispanic-Serving Institution located in scenic San Antonio, Texas. The main campus, where the graduate position will be housed, enrolls ~34,000 …
UBC Okanagan, Quantitative Ecology - QIIME 2 Forum
Jul 10, 2019 · Situated in the heart of the Okanagan Valley, one of the most scenic regions in Canada, it offers an intimate learning environment and excellent opportunities for regional, national, and …
Importing bins/mags into Qiime2 - Technical Support - QIIME 2 Forum
Mar 31, 2025 · Dear devs, dear users I am processing metagenome dataset. I currently follow the q2-moshpit: A set of tutorials showcasing shotgun metagenomics analysis workflows, but I modified …
taxonomy mitochondria vs D_4__Mitochondria - General Discussion
Apr 21, 2025 · Hi everyone, I have just finished going through my qiime2 analysis following the moving pictures and fecal sample tutorial (for merging). I have created my phyloseq object using the …
Observed ASV richness drops after adding 3rd MiSeq library — why do …
Oct 16, 2025 · Basubi: I merged library A + B → richness stays ~350 (fungi) / ~300 (bacteria). But when I merge library C with A+B the observed ASV richness drops for both kingdoms (I lose ≈100 ASVs for …
Can silva database be used in protist taxonomic assignment?
Dec 3, 2025 · Hi, I want to profile the protist community in the rhizosphere, can I use silva database as listed following?
PERMANOVA results significant, but differential abundance results ...
Oct 19, 2025 · Hello, I am performing a study about differences in microbial communities between two sample types in an Antarctic ecosystem. According to PERMANOVA, there are significant …
Taxonomy Analysis - reference data and train dataset
Apr 17, 2019 · Then I saw that we should not use the green gene data and rep-seqs qza for our real samples. I am confused which reference file that I need to use and if I need to train my data set?